Using X11 Virtual Frame Buffer (Xvfb) in a submission script

Tue 08 October 2013 by Dr. Dirk Colbry

Blog post edited by Nicholas Anthony Rahme

Some programs require access to a display in order to run properly. For example, MATLAB will provide an error if you try to create an AVI file from a image frame in -nodisplay mode. This can be an annoying problem on the HPCC …

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2013-10-03 Making your research go faster - ChE_MSE 802 Presentation

Sat 05 October 2013 by Dr. Dirk Colbry

Blog post added by Anonymous

Below are the slides I gave at a presentation for ChE_MSE 802. Most of the students seemed interested in either fluid dynamics or molecular dynamics problems. I presented some new background slides which talked about the pillars of science.

2013-10-03 ChE_MSE 802.pdf

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2013-2014 New Faculty Orientation

Thu 22 August 2013 by Dr. Dirk Colbry

Blog post added by Anonymous

Below are the slides I presented to the New Faculty Orientation held on August 20 and 26.

2013 New Faculty Orientation.pdf

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Blogpost migrated from ICER Wiki using custom python script. Comment on errors below.

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2013 Introduction to iCER - Buell Lab Seminar

Thu 01 August 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migrated to Confluence 4.0"

Below are slides for a seminar I am put together for C. Robin Buell's Bioinformatics workshop. This talk gives an overview of iCER and our reseources focusing on bioinformatics. I also introduced the concepts of plesently parallel jobs and give …

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Running ANSYS CFX5 solver on the HPCC

Tue 30 July 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migration of unmigrated content due to installation of a new plugin"

The following job submission script should get a parallel MPI solve of the cfx5solver working. In order for this to work on our system I needed to change the ANSYS module file to include …

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Presentation Slides from ASEE 2013, Atlanta GA

Mon 29 July 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migrated to Confluence 4.0"

Below are links to my slides for ASEE 2013 presentations:

  • Katy Luchini-Colbry and Dirk Colbry. “ Gadget Avalanche: A Technology Literacy Course for Novice Adults. ” ASEE Annual Conference Atlanta, GA, June 2013. [paper] [slides]

  • Dirk Colbry and Katy Luchini-Colbry. “ STEM inSight …

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Presentation Slides from XSEDE 2013, San Diego CA

Mon 29 July 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migrated to Confluence 4.0"

Below are links to my slides for XSEDE 2013 presentations:

  • Dirk Colbry, William Punch, Wolfgang Bauer, “The Institute for Cyber-Enabled Research: Regional Organization to Promote Computation in Science.” XSEDE 2013 Conference San Diego, CA, July 2013. [slides]

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Running the XSEDE MPI workshop examples on the HPCC

Tue 18 June 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migration of unmigrated content due to installation of a new plugin"

Differences in examples to get them to run on the HPCC.

Step 1:
Download these examples buy loading the power tools module and using the get example command:

module load powertools
getexample
getexample XSEDE_MPI_WORKSHOP …
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Spring 2013 Faculty Seminar Workshops

Tue 07 May 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migrated to Confluence 4.0"

Here are the slides for the Intro to HPCC, Intro to MATLAB and Advanced HPCC Classes.

2013-05-07 Introduction to Matlab.pdf

2013-05-08 Introduction to HPCC.pdf
2013-05-08 Advanced HPCC.pdf

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Working with ImageJ plugins on the HPCC

Mon 06 May 2013 by Dr. Dirk Colbry

Blog post edited by Anonymous - "Migration of unmigrated content due to installation of a new plugin"

Post written by Dan Perez (iCER Intern)

Errors

One of the iCER users has had problems getting ImageJ - ImageViewer scripts and plugins working on the HPCC. The ImageViewer classes, plugins, and scripts are in …

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