HPCC Hardware presentation to BEACON Graduate students and Postdocs
ffmpeg to select video sequences
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ffmpeg can be used to crop the start and end times of a video sequece. Use the following command to read though the ffmpeg help message in the terminal window:
man ffmpeg
Use arrow …
read moreImage Phenomics- The Development of an Image Grammar for High-Throughput Phenotyping Using Biological Images
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I was excited to give a talk as part of the BEACON seminar series. Our research group has been working on this topic for a while and it is exciting to get all of the ideas down into one clear …
read more2012-09-06 Electrical and Computer Engineering, Faculty Seminar
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Here is a link to the talk I gave to the Electrical and Computer Engineering Faculty at their Weekly Seminar. This is a variation on my talk about how to utilize advanced computational resources to make your research go faster …
read moreChoosing more than one architecture type
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Although all of our nodes are binary compatible, the HPCC is a heterogeneous cluster based built from many different types of nodes. The node types are based on the type of architecture that the …
read moreAltering jobs that are in the queue
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Recently a user came by my office to complain that his jobs where not running in the queue. This is a reasonable complainte because many of our nodes are being drained to reboot and …
read moreResearch Software Design Tradeoffs
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After the successes (and setbacks) of our five summer undergraduate research assistants, we finally have a useable ChamView prototype that is based on my concept of an image grammar. My work over the last week or so has been to …
read moreSummer Undergraduate Research Students
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I had a wonderful opportunity this summer to work with five undergraduate students on my research. The students were part of a 10 week research program and worked on different components of the ChamView Project. This was the largest group …
read moreDrosophila Tour
Blog post edited by Anonymous - "Migrated to Confluence 4.0"We had the opportunity last week to stop by the Dworkin lab for a quick tour.Dr. Ian Dworkin (link toDworkinlab) is doing someinteresting work studying evolution and drosophila wings (fruit flies). He hadrows of cages, each filled with different …
read moreMicroscope Demonstration
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Our research team had an opportunity to see a demonstration of an Olympus
two-photon microscope
.
This impressive piece of hardware can take focused depth images into a sample.These types of scopes are used specifically with biological samples that canbe …